Installation

Stable release

Option 1 - recommended for users

To install cellmaps_vnn, run this command in your terminal:

$ pip install cellmaps_vnn

This is the preferred method to install cellmaps_vnn, as it will always install the most recent stable release.

If you don’t have pip installed, this Python installation guide can guide you through the process.

From sources

Option 2.1 - recommended for developers

The sources for cellmaps_vnn can be downloaded from the Github repo.

You can either clone the public repository:

$ git clone https://github.com/idekerlab/cellmaps_vnn.git

Or download the tarball:

$ curl  -OL https://github.com/idekerlab/cellmaps_vnn/tarball/master

Once you have a copy of the source, you can install it with:

$ python setup.py install

Using Makefile

Option 2.2 - recommended for developers

The package provides a Makefile that could be used for installation and building of cellmaps_vnn

git clone https://github.com/idekerlab/cellmaps_vnn.git
cd cellmaps_vnn
pip install -r requirements_dev.txt
make clean dist
pip install dist/cellmaps_pipeline*whl

Each time you make code chages you need to unintall and install the package again.

pip uninstall cellmaps_vnn -y; make clean dist; pip install dist/cellmaps_pipeline*whl